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Species belonging to selected taxon:
Vitis shuttleworthii
,
Vitis vinifera
ABOUT THIS RECORD
ID:
MNEST008331
species:
Vitis vinifera
miRNA family:
MIR482
source:
miRNEST
Taxonomy by NCBI:
Vitis vinifera
Vitis
Vitaceae
Vitales
rosids incertae sedis
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCTTTCCTACTCCTCCCATTCC
miRNA*
AATTGGAGAGTAGGAAAGCTT
mismatches:
2
bulges:
1
View larger
pre-miRNA
GGTGTGAATGTGAAGTCTTTTGATTCCTGCGATTATTTGGG
AATTGGAGAGTAGGAAAGCTT
AGCCATCTATTTCCTTCATGGTTTCCTCTCCATGGATT
GGGGTCTAGAGCTATG
TCTTTCCTACTCCTCCCATTCC
TATTGTTTTCGGGGATTTCCGCTTCTCTTCTCTTAACA
dot-bracket secondary structure
((...(((...(((((.....((((((((.((.((..((((
(((.(((((((((((((((.(
(((..((((..((((((((((........))))))...
))))..)))))))).)
.)))))))))).)))).)))))
)).)).)).))))))))...)))))..))).)).....
SIMILARITIES
miRBase
vvi-MIR482
:
4e-48
PMRD
vvi-miR482
:
4e-48
microPC
miR482
:
0.000009
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
degradome data
download this record
deep sequencing data evidence